The Landscape of Viral Expression and Host Gene Fusion and Adaptation in Human Cancer
 Online Supplementary Resource
About | Results | Larsson lab

Library statistics

Sequence libraries:89
Unique samples:89
Unique tumors:87
Unique normals:2
Unique patients:87
Reads per sample (mean):189 million
Total reads:16843 million
Assembled contigs (>400 nt):715

Longest contig-to-virus alignments (italic = <95% identity)

Tumor sample(hover/click for info)
Normal sample

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11
Human papillomavirus type 16 769 2106 1641 1178 469 2256 420 3053 851 1469 828 841 2217 1713 1178 1161 675 1355 2631 1421 1379 769 840 548 969 1354 493 2525 527 1712 986 3267 841 769 841 2993 636 748 1178 840 530 1262 1177 1270 839 1125 509 473 841 918 806 1185 954
Human papillomavirus type 18 524 877 516 1358 1474 780 779 1013 1012 967 930
Human papillomavirus type 31 1262 1013 1057
Human papillomavirus type 33 862
Human papillomavirus type 39 1036
Human papillomavirus type 45 1667 520 521 1200 1025
Human papillomavirus type 52 931 707
Human papillomavirus type 58 863 980 1318
Human papillomavirus type 59 1242
Human papillomavirus type 68b 531
Human papillomavirus type 69 614
Human papillomavirus type 70 1830



Inquiries can be addressed to erik.larsson@gu.se