The Landscape of Viral Expression and Host Gene Fusion and Adaptation in Human Cancer
 Online Supplementary Resource
About | Results | Larsson lab

Library statistics

Sequence libraries:321
Unique samples:320
Unique tumors:316
Unique normals:4
Unique patients:316
Reads per sample (mean):31 million
Total reads screened:10022 million
Total viral alignments:9450

Viral hits in ppm (parts-per-million) of total library reads

Tumor sample(hover for info)
Normal sample

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11 11 11
Brome mosaic virus RNA 1 1 1
Brome mosaic virus RNA 2 1
Brome mosaic virus RNA 3 1
Human herpesvirus 4 2
Human herpesvirus 4 type 1 2
Human papillomavirus type 16 198
Spodoptera frugiperda ascovirus 1a 22
Tomato mosaic virus 4
White clover mosaic virus 1

Non-normalized read counts

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11 11 11
Abelson murine leukemia virus 17 1 16 1 2 1 1 1 2 1 1 2 1 1 1 1
Acanthocystis turfacea Chlorella virus 1 1
Alfalfa mosaic virus RNA 3 1
Apple stem pitting virus 1
Assembled genome 2: Mosaic-like virus 2 1 1 1 5 2 1 17 1
Autographa californica nucleopolyhedrovirus 1 1 2 5 1 2 3 1 1 1 1 1 1 1 2 1 1 1 2 3 1 1 1 1 1 1 1 1 2 1
Avian endogenous retrovirus EAV-HP 1 2
Avian leukemia virus 1 2 1
Avian leukosis virus - RSA 1 2 1
Bell pepper endornavirus 1 1
Blattella germanica densovirus 1 5 1 3
Bombyx mandarina nucleopolyhedrovirus 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1
Bombyx mori NPV 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1
Bovine viral diarrhea virus 1 1 3 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 6 3 1 1 1 1 1
Brome mosaic virus RNA 1 35 6 39 1 1 1 1 1 1 1 3 2
Brome mosaic virus RNA 2 31 1 2 14 3 2 1 3 1 1 1 3
Brome mosaic virus RNA 3 44 18 1 1 1 1 2 1 1 1 2 1
Citrus tristeza virus 7
Cucumber green mottle mosaic virus 1
Cucumber mosaic virus RNA 1 1
Cucumber mosaic virus RNA 3 1
Cucurbit leaf crumple virus DNA B 1
Deformed wing virus 1
Dendrolimus punctatus densovirus 2
Encephalomyocarditis virus 1 1 1 1 1
Friend murine leukemia virus 1
Garlic latent virus 1 1
Garlic virus A 4
Human herpesvirus 1 1 1 1 2 1 1 1 1 1 1
Human herpesvirus 4 2 4 1 1 1 1 2 2 1 1 25 1 65
Human herpesvirus 4 type 1 2 4 1 1 1 1 1 2 1 1 25 1 67
Human herpesvirus 5 1 1 1 3 1 3 2 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 2 1
Human herpesvirus 6A 2
Human herpesvirus 7 1
Human immunodeficiency virus 1 13 2 1
Human papillomavirus - 2 2
Human papillomavirus - 5 2 10 1
Human papillomavirus type 132 1
Human papillomavirus type 16 6725
Human papillomavirus type 18 1 1 1 2 1 1 1 1 1 1 2 1
Human papillomavirus type 4 1 1 1
Human papillomavirus type 48 1
Human papillomavirus type 88 1
Influenza C virus (C/Ann Arbor/1/50) segment 3 2
Influenza C virus (C/Ann Arbor/1/50) segment 4 2
Influenza C virus (C/Ann Arbor/1/50) segment 5 3
Invertebrate iridescent virus 6 1 2 4 1 2 1 3 4 1 2 1 4 3 2 12 5 5 1 1 8 1 1 1 2 5 5 3 2 4 1 1 5 1 2 1 1 2 2 1 3 11 2 1 1 1 2 1 1 1 1 1 4 1 2
Little cherry virus 2 3
Mamestra configurata NPV-B 1
Marseillevirus 1 1
Mason-Pfizer monkey virus 1 1 2 1 1 1 1
Megavirus chiliensis 1
Merkel cell polyomavirus 1 1
Moloney murine leukemia virus 1 13 1 13 1 1 1 2 1 1 2 1 1 1
Moloney murine sarcoma virus 1 12 10 1 1 2 2 1
Murine osteosarcoma virus 1 1 2 1 3 5 1 2 4 1 1 3 1 1 1 4 5 1 4 3 1 2 4 1 3 2 1 1 1 1 5 3 6 1 1 2 1 1 2 2 7 1 1 1 2 1 3 6 1 2 2 1 1 1 1 2 2 1 1 8 1 1 4 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 6 1 2 3 1 3 9 1 1 3 2 2 3 2 1 1 1 3 3 1 2
Murine type C retrovirus 1 1 3 1 1 2 1 1 2 1 1 1 2
Musca domestica salivary gland hypertrophy virus 1
Oryza sativa endornavirus 3
Panicum mosaic virus 1
Paramecium bursaria Chlorella virus 1 3 2
Paramecium bursaria Chlorella virus FR483 1 1 1 2 1 2 1 1 5 1 1 1 1 4 1 3 1 4 3 4 1 1 2 4 1 1 1 1 1 1 12 4 4 2 8 1 1 6 3 1 1 2 1 3 2 6 4 5 4 3 1 1 2 2 1 6 1 1 3 1 2 1 1 1 1 1 1 2 2 6 1 4 7 10 1 4 1 1 1 2 1 1 2 2 3 1 1 1 1 1 1 2 4 2 1 5 1 2
Peanut stunt virus RNA 1 2
Peanut stunt virus RNA 2 1
Pepper mild mottle virus 1 2 2 1
Pestivirus Giraffe-1 1 3 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 6 2 1 1 1 1 1
Plutella xylostella multiple nucleopolyhedrovirus 1 1 2 5 2 3 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1
Poinsettia cryptic virus 1
Porcine endogenous retrovirus E 16
PreXMRV-1 provirus 1 3 2 1 1 1 1
Prunus necrotic ringspot virus RNA 2 4
RD114 retrovirus 2 2 1
Rachiplusia ou MNPV 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1
Raphanus sativus cryptic virus 1 dsRNA 2 1
Rauscher murine leukemia virus 1
Rous sarcoma virus 1 2 1
Sclerophthora macrospora virus B 3
Shamonda virus segment S 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2
Simian virus 40 4 2 1 1 1 1 1 1 1 1 1 1
Spleen focus-forming virus 1 1
Spodoptera frugiperda ascovirus 1a 1 11 739
Tobacco mild green mosaic virus 1
Tobacco mosaic virus 3
Tobacco streak virus RNA 3 1
Tomato mosaic virus 116 1 1 1 5 1 1
WU Polyomavirus 1
Watermelon mosaic virus 1
White clover mosaic virus 1 46 1
Wiseana iridescent virus 3 1 1 1 1 1 1 5 2 3 2 2 1 4 2 1 2 3 1 1 1 5 2 1 1 1 1 2 3 1 1 1 1
Woodchuck hepatitis virus 1
Woolly monkey sarcoma virus 1 1 1 1 1
Xestia c-nigrum granulovirus 1
Y73 sarcoma virus 1 1



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