The Landscape of Viral Expression and Host Gene Fusion and Adaptation in Human Cancer
 Online Supplementary Resource
About | Results | Larsson lab

Library statistics

Sequence libraries:43
Unique samples:43
Unique tumors:43
Unique normals:0
Unique patients:43
Reads per sample (mean):155 million
Total reads screened:6674 million
Total viral alignments:57463

Viral hits in ppm (parts-per-million) of total library reads

Tumor sample(hover for info)
Normal sample

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01
Human herpesvirus 4 174 1
Human herpesvirus 4 type 1 175 1
Human herpesvirus 5 2 1
Macacine herpesvirus 4 16

Non-normalized read counts

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01
Abelson murine leukemia virus 1
Autographa californica nucleopolyhedrovirus 2 4 2 2 1 2 2 2 2 2 3 4 2
Bombyx mandarina nucleopolyhedrovirus 1 2 1 1 1 2 2 2 1
Bombyx mori NPV 1 2 2 1 1 1 2 1 2 2
Cauliflower mosaic virus 2
Cercopithecine herpesvirus 5 1
Cynomolgus macaque cytomegalovirus strain Ottawa 1
Human herpesvirus 4 6 26431 12 7 30 55 16 4 28 166 30 14 1 121 10 1 2 6
Human herpesvirus 4 type 1 6 26504 12 7 30 53 19 4 29 169 30 14 1 119 10 1 2 6
Human herpesvirus 5 2 20 1 1 25 48 96 240 1 211
Human herpesvirus 6A 25 9 3 4 5
Human herpesvirus 6B 59 26 6 6 13
Human herpesvirus 8 126
Human immunodeficiency virus 1 1 2
Human papillomavirus type 33 3
Human papillomavirus type 41 1
Macacine herpesvirus 3 1
Macacine herpesvirus 4 2399 2 2 14 1 3 5
Maruca vitrata MNPV 1
Merkel cell polyomavirus 2
Moloney murine leukemia virus 2 2 2
Moloney murine sarcoma virus 2 1 2
Murine osteosarcoma virus 1 1
Panine herpesvirus 2 4 3 7
Plutella xylostella multiple nucleopolyhedrovirus 2 4 2 2 2 2 2 2 2 3 4 2
Rachiplusia ou MNPV 1 4 1 2 1 2 1 1 2 2
Shamonda virus segment S 1 1
Simian virus 40 1
Tobacco mosaic virus 4



Inquiries can be addressed to erik.larsson@gu.se