The Landscape of Viral Expression and Host Gene Fusion and Adaptation in Human Cancer
 Online Supplementary Resource
About | Results | Larsson lab

Library statistics

Sequence libraries:71
Unique samples:71
Unique tumors:71
Unique normals:0
Unique patients:71
Reads per sample (mean):27 million
Total reads screened:1902 million
Total viral alignments:1403

Viral hits in ppm (parts-per-million) of total library reads

Tumor sample(hover for info)
Normal sample

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01
Human herpesvirus 4 2
Human herpesvirus 4 type 1 2
Human herpesvirus 5 1 1
Human herpesvirus 6A 4
Human herpesvirus 6B 21 1
Human immunodeficiency virus 1 4
Human papillomavirus type 18 3

Non-normalized read counts

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01
Abelson murine leukemia virus 1 1 5 4 1 1 1 1
Assembled genome 2: Mosaic-like virus 1 2
Autographa californica nucleopolyhedrovirus 2
Bell pepper endornavirus 3
Bovine viral diarrhea virus 1 1 1 1 1 1 1 1
Human adenovirus 54 1
Human adenovirus D 2
Human herpesvirus 4 1 2 4 1 6 2 1 67 1 1 1 1 7 2 2 1 25 1 6 6 1
Human herpesvirus 4 type 1 1 2 4 1 6 2 1 67 1 1 1 1 7 2 2 1 25 1 6 6 1
Human herpesvirus 5 21 1 8 7 5 1 1 1 19 15 9 3 26 6 4 26 1 6
Human herpesvirus 6A 1 1 98 5
Human herpesvirus 6B 3 10 480 26
Human herpesvirus 7 2
Human immunodeficiency virus 1 99
Human papillomavirus type 18 1 2 80
Macacine herpesvirus 4 1
Moloney murine leukemia virus 2 2
Moloney murine sarcoma virus 1
Murine osteosarcoma virus 5 3 4 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 2 1 4 1
Murine type C retrovirus 2
Pepper mild mottle virus 1
Pestivirus Giraffe-1 1 1 1 1 1 1 1
Plutella xylostella multiple nucleopolyhedrovirus 2
Polyomavirus HPyV6 1
Polyomavirus HPyV7 4
PreXMRV-1 provirus 1
Rachiplusia ou MNPV 1
Shamonda virus segment S 2 1 1 1 2 1 1 2 1 1 1 1 1 1
Simian virus 40 3
Simian-Human immunodeficiency virus 8
Spleen focus-forming virus 1
Tomato mosaic virus 1
White clover mosaic virus 2
Woodchuck hepatitis virus 23
Woolly monkey sarcoma virus 1 1 1 1
Y73 sarcoma virus 1 1



Inquiries can be addressed to erik.larsson@gu.se