The Landscape of Viral Expression and Host Gene Fusion and Adaptation in Human Cancer
 Online Supplementary Resource
About | Results | Larsson lab

Library statistics

Sequence libraries:179
Unique samples:179
Unique tumors:140
Unique normals:39
Unique patients:142
Reads per sample (mean):167 million
Total reads screened:29941 million
Total viral alignments:484

Viral hits in ppm (parts-per-million) of total library reads

Tumor sample(hover for info)
Normal sample

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11

Non-normalized read counts

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11
Abelson murine leukemia virus 1
Alfalfa mosaic virus RNA 3 2
Assembled genome 2: Mosaic-like virus 3 2
Autographa californica nucleopolyhedrovirus 1 1 1 1 1 1 2 1 2 3 3 1 1 1 1 1 2 1 1 2 2 2 1 1 1 1 2 4 1 1 2 1 1 2 1 1 1 1 1 3 3 1 1 2 1 1 1 3 2 1 1 1 1
Avian leukemia virus 1
Avian leukosis virus - RSA 1
Bombyx mandarina nucleopolyhedrovirus 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1
Bombyx mori NPV 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
Bovine viral diarrhea virus 1 1 1 1
Deformed wing virus 2 4 2 1
Human herpesvirus 4 4
Human herpesvirus 4 type 1 4
Human herpesvirus 6A 1
Human herpesvirus 6B 10
Human immunodeficiency virus 1 4 3
Human papillomavirus type 16 2 4 4
Kakugo virus 1 4 1 2
Lettuce big-vein associated virus RNA 1 1
Macacine herpesvirus 4 2
Maruca vitrata MNPV 1 1 1 1
Moloney murine leukemia virus 2
Murine osteosarcoma virus 1 3 1 2 1 1 1 2 1 1 1 1 1 1 1
Pepper mild mottle virus 4
Pestivirus Giraffe-1 1 1 1
Plutella xylostella multiple nucleopolyhedrovirus 1 1 1 1 1 1 2 1 2 3 3 1 1 1 1 1 2 1 1 2 2 2 1 1 1 1 2 4 1 1 2 1 1 2 1 1 1 1 1 3 3 1 1 2 1 1 1 3 2 1 1 1 1
Polyomavirus HPyV7 2 2 2 2 1 2 2
Potato virus S 25
Potato virus X 1
Prune dwarf virus 2
Rachiplusia ou MNPV 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1
Rous sarcoma virus 1
Shamonda virus segment S 7 1 27 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 1 15 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 1 1 4 1 1
Simian adenovirus 49 1
Simian virus 40 1
Spodoptera litura granulovirus 2
Tobacco etch virus 1
Tobacco mosaic virus 1
Tobacco ringspot virus RNA 2 1
Tomato mosaic virus 4 2
Woolly monkey sarcoma virus 1 1
Y73 sarcoma virus 1



Inquiries can be addressed to erik.larsson@gu.se