The Landscape of Viral Expression and Host Gene Fusion and Adaptation in Human Cancer
Online Supplementary Resource
About | Results | Larsson lab

Library statistics

Sequence libraries:54
Unique samples:54
Unique tumors:34
Unique normals:20
Unique patients:36
Reads per sample (mean):149 million
Total reads screened:8065 million
Total viral alignments:433531

Viral hits in ppm (parts-per-million) of total library reads

Tumor sample(hover for info)
Normal sample

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11
Hepatitis B virus 185 6 3 2 225 16 415 11 854 233 37 2 294 136 92 134 197
Hepatitis C virus genotype 1 2

Non-normalized read counts

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11
Alfalfa mosaic virus RNA 1 1
Alfalfa mosaic virus RNA 3 2
Autographa californica nucleopolyhedrovirus 1 2 1 2 2 1
Bombyx mandarina nucleopolyhedrovirus 1 1 1
Bombyx mori NPV 1 1 1
Brome mosaic virus RNA 1 2 4
Brome mosaic virus RNA 2 2 2 4 2
Cucumber green mottle mosaic virus 2
Cucumber mosaic virus RNA 3 1
Friend murine leukemia virus 1
Ground squirrel hepatitis virus 1 3 8 9 2 3 19 15 70 11 24 12 23 153
Hepatitis B virus 1 4 30377 26 997 403 361 42996 3502 55485 1545 1 104249 2 43882 7814 243 4 42595 19851 12 2 14758 24125 38994
Hepatitis C virus genotype 1 101 1 145
Hepatitis C virus genotype 2 2 2
Hepatitis C virus genotype 3, genome 1
Hepatitis C virus genotype 4, genome 2 7 1
Hepatitis C virus genotype 5, genome 2 1
Hepatitis C virus genotype 6 1 2
Human herpesvirus 4 2 4 2
Human herpesvirus 4 type 1 2 4 2
Human herpesvirus 5 2 57 2 2 2
Human herpesvirus 6A 1
Human herpesvirus 6B 1
Human papillomavirus type 18 60 4
Human papillomavirus type 4 2
Human papillomavirus type 45 2
Maruca vitrata MNPV 1
Merkel cell polyomavirus 2
Moloney murine leukemia virus 2 1
Murine osteosarcoma virus 1
Murine type C retrovirus 2
Pepper mild mottle virus 1
Plutella xylostella multiple nucleopolyhedrovirus 1 1 2 2 1
PreXMRV-1 provirus 1
Rachiplusia ou MNPV 1 2 1 2 1
Rauscher murine leukemia virus 1 1
Shamonda virus segment S 3 1 4 2 1 1 9 1 1 1 1 4 1 1 2 1 1 1 13 1
Spleen focus-forming virus 1
Spodoptera frugiperda ascovirus 1a 2
Turnip vein-clearing virus 1
Woodchuck hepatitis virus 1 15 1 1 8 9 175 10 12 3 21 154
Woolly monkey sarcoma virus 1



Inquiries can be addressed to erik.larsson@gu.se