The Landscape of Viral Expression and Host Gene Fusion and Adaptation in Human Cancer
 Online Supplementary Resource
About | Results | Larsson lab

Library statistics

Sequence libraries:74
Unique samples:74
Unique tumors:59
Unique normals:15
Unique patients:62
Reads per sample (mean):178 million
Total reads screened:13195 million
Total viral alignments:661

Viral hits in ppm (parts-per-million) of total library reads

Tumor sample(hover for info)
Normal sample

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11

Non-normalized read counts

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11
Abelson murine leukemia virus 4 1 1 1 1
Assembled genome 2: Mosaic-like virus 19
Autographa californica nucleopolyhedrovirus 10 2 1 1 2 1 3 1 1 3 3 1 2 2 1 2 1 2 3 2 1 1 1 2 1
Bombyx mandarina nucleopolyhedrovirus 5 1 1 1 1 2 1 1 1 2 1 2 1 1 1 1
Bombyx mori NPV 5 1 1 1 1 2 1 1 1 1 2 1 1 1 1
Bovine viral diarrhea virus 1 1
Brome mosaic virus RNA 1 4
Brome mosaic virus RNA 2 4
Brome mosaic virus RNA 3 8
Friend murine leukemia virus 1 2 2 5 1 1
Human herpesvirus 1 2 2 2
Human herpesvirus 2 2
Human herpesvirus 4 1
Human herpesvirus 4 type 1 1
Human herpesvirus 5 2
Human papillomavirus type 18 22 169 4
Human papillomavirus type 45 4
Lucerne transient streak virus 1
Maruca vitrata MNPV 2 1 1
Moloney murine leukemia virus 8 2 6 4 2 7 2 2
Moloney murine sarcoma virus 8 2 6 1
Murine osteosarcoma virus 1
Murine type C retrovirus 5 1 2 2 1 45 2 1
Pestivirus Giraffe-1 1
Plutella xylostella multiple nucleopolyhedrovirus 10 2 1 1 2 1 3 1 1 3 3 1 2 2 1 2 1 2 3 2 1 1 1 2 1
Potato leafroll virus 1
PreXMRV-1 provirus 2 21 2 1
Rachiplusia ou MNPV 5 1 1 1 2 1 2 1 2 2 1 2 2 2 2 1
Rauscher murine leukemia virus 1 2 4 2 4 1
Shamonda virus segment S 1 2 1 1 1 1 1 2 1 2 3 1 2 1 1 3 2 1 1 2 2 1 2 3 2 1 2
Simian virus 40 1
Spleen focus-forming virus 11
Spodoptera litura granulovirus 2
Tobacco ringspot virus RNA 1 1
Tobacco ringspot virus satellite RNA 2
Tobacco streak virus RNA 1 4
Trichoplusia ni SNPV 1



Inquiries can be addressed to erik.larsson@gu.se