The Landscape of Viral Expression and Host Gene Fusion and Adaptation in Human Cancer
 Online Supplementary Resource
About | Results | Larsson lab

Library statistics

Sequence libraries:196
Unique samples:194
Unique tumors:194
Unique normals:0
Unique patients:194
Reads per sample (mean):26 million
Total reads screened:5069 million
Total viral alignments:26745

Viral hits in ppm (parts-per-million) of total library reads

Tumor sample(hover for info)
Normal sample

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01
Assembled genome 1: Coxsackie-like virus 68
Assembled genome 2: Mosaic-like virus 10
Friend murine leukemia virus 7
Human coxsackievirus A22 strain ban99-10427 2
Human herpesvirus 4 3 4 1 13 2
Human herpesvirus 4 type 1 3 4 1 13 2 1
Human herpesvirus 5 2 3 2 9 5 16 2
Human herpesvirus 6A 2 3
Human herpesvirus 6B 8 12 3
Human papillomavirus type 18 2 3 6 1 1 1 3 1 5 2 4
Moloney murine leukemia virus 10
Moloney murine sarcoma virus 3
Murine osteosarcoma virus 19
Murine type C retrovirus 456 3
PreXMRV-1 provirus 189 1
Rauscher murine leukemia virus 5
Spleen focus-forming virus 63
Tomato mosaic virus 2

Non-normalized read counts

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01
Abelson murine leukemia virus 1 1 1 1 1 2 2
Alternanthera mosaic virus 1
Assembled genome 1: Coxsackie-like virus 1 1011 1
Assembled genome 2: Mosaic-like virus 3 339 1 1
Autographa californica nucleopolyhedrovirus 1 1 1 1 1
Blattella germanica densovirus 1
Bombyx mandarina nucleopolyhedrovirus 1 1
Bombyx mori NPV 1 1
Bovine viral diarrhea virus 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1
Brome mosaic virus RNA 1 1 4 2 2 1 2 1 1 1 1 4 1 1 1 1
Brome mosaic virus RNA 2 1 8 1 1 2
Brome mosaic virus RNA 3 1 1 3 1 1
Cucurbit yellow stunting disorder virus RNA1 1
Cucurbit yellow stunting disorder virus RNA2 1
Friend murine leukemia virus 198 2 1
Garlic virus A 1
Gibbon ape leukemia virus 1
Helicoverpa armigera granulovirus 1
Human coronavirus 229E 1
Human coxsackievirus A22 strain ban99-10427 27
Human herpesvirus 4 97 7 1 4 1 1 1 15 1 2 1 116 3 8 3 6 1 2 3 36 3 1 3 2 1 1 369 20 6 3 2 5 1 1 1 2 3 1 1 1 24 1 3 2
Human herpesvirus 4 type 1 99 7 1 4 1 1 1 15 1 2 1 120 3 8 3 6 1 3 38 3 3 2 1 1 379 19 29 3 2 5 1 1 1 2 3 1 1 1 23 1 3 2
Human herpesvirus 5 15 14 3 2 4 1 1 1 2 45 3 3 2 104 2 1 1 38 21 5 4 11 1 7 246 139 29 510 20 3 1 5 4 2 28 1 1 27 2 26 23 1
Human herpesvirus 6A 4 55 1 82 1 2 1 15
Human herpesvirus 6B 4 1 17 228 4 2 362 2 3 5 3 1 77 1
Human herpesvirus 7 16
Human papillomavirus - 5 1 1 1 1 1
Human papillomavirus type 137 1
Human papillomavirus type 18 5 1 7 6 10 43 1 4 3 3 1 1 5 1 4 26 11 122 2 38 11 4 3 21 3 6 21 2 1 1 13 1 2 19 39 15 18 1 5 7 7 1 34 1 1 63 6 51 19 88 2 1 2 10 9 1 5 2 14 1
Human papillomavirus type 45 2 1
Invertebrate iridescent virus 6 1 1 1 1
Macacine herpesvirus 4 1 5 3 1 1
Mason-Pfizer monkey virus 4 1
Merkel cell polyomavirus 1
Moloney murine leukemia virus 272 2 3 1
Moloney murine sarcoma virus 93 1
Murine osteosarcoma virus 2 1 4 1 1 1 1 1 1 1 7 3 2 1 1 2 1 1 507 1 1 1 1 1 1 2 8 3 3 2 1 3 1 1 1 1 1 2 3 1 1 1 3 9 4 1 2 2 2 1
Murine type C retrovirus 2 3 9 1 12193 76 1 1 2 1 1 1
Oryza sativa endornavirus 1
Panine herpesvirus 2 1 1
Papaya ringspot virus 1 1 3
Paprika mild mottle virus 1
Paramecium bursaria Chlorella virus 1 1 3
Paramecium bursaria Chlorella virus FR483 1 1 1 1 1 1 2 1 1 1 1 2 1 1 4 1 1 2 1
Pepino mosaic virus 1
Pepper mild mottle virus 1 1
Pestivirus Giraffe-1 1 2 1 1 1 1 1 1 1 1 1 1
Plutella xylostella multiple nucleopolyhedrovirus 1 1 1 1 1
Polyomavirus HPyV6 8 1 1 4
PreXMRV-1 provirus 1 1 3 1 5062 30 1 1 1
Rachiplusia ou MNPV 1
Rauscher murine leukemia virus 125 2 1
Saccharomyces 20S RNA narnavirus 1 18
Saccharomyces cerevisiae virus L-A (L1) 1
Shamonda virus segment S 1 1 1 1 3 1 1 1 7 1 2 1 1 1 1 1 1 1 1 1 2 1 4 1 1
Simian virus 40 1 1 1 1
Spleen focus-forming virus 2 1677 2 9
Sweet potato virus C 3
Tobacco mosaic virus 1
Tomato mosaic virus 1 1 57 2 1 1
Watermelon mosaic virus 20 6
Wiseana iridescent virus 1 1
Woolly monkey sarcoma virus 1 1
Xestia c-nigrum granulovirus 1
Y73 sarcoma virus 2 1 1



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