The Landscape of Viral Expression and Host Gene Fusion and Adaptation in Human Cancer
 Online Supplementary Resource
About | Results | Larsson lab

Library statistics

Sequence libraries:89
Unique samples:89
Unique tumors:87
Unique normals:2
Unique patients:87
Reads per sample (mean):189 million
Total reads screened:16843 million
Total viral alignments:3232205

Viral hits in ppm (parts-per-million) of total library reads

Tumor sample(hover for info)
Normal sample

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11
Human papillomavirus type 16 106 60 251 72 39 536 127 110 17 538 95 249 185 133 111 247 148 374 149 360 598 369 216 25 160 215 196 318 140 200 116 352 217 256 273 111 51 123 174 222 33 58 28 158 91 11 227 311 98 380 170 38 41 2 190 496
Human papillomavirus type 18 23 23 2 64 78 33 460 446 68 8 198 137 2 169
Human papillomavirus type 26 6
Human papillomavirus type 31 266 2 170 560
Human papillomavirus type 33 722 9 4 3
Human papillomavirus type 39 4 38 19
Human papillomavirus type 45 151 1 46 4 15 10 3 434 17 251 1
Human papillomavirus type 52 2 101 66
Human papillomavirus type 58 8 492 478 100
Human papillomavirus type 59 20
Human papillomavirus type 68b 1 257 1
Human papillomavirus type 69 99
Human papillomavirus type 70 79 13 2

Non-normalized read counts

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11
Autographa californica nucleopolyhedrovirus 1 1 2 1 2 1 1 1 1 2 1 1 1 1 1 1 2 2 2 6 2 1 9 6 3 3
Bombyx mandarina nucleopolyhedrovirus 1 1 1 1 1 3 1 4 1 2
Bombyx mori NPV 1 1 1 1 1 2 3 1 2
Bovine viral diarrhea virus 1 1 1 1 1 1 1 1
Brome mosaic virus RNA 1 11
Brome mosaic virus RNA 2 4
Friend murine leukemia virus 2
Hepatitis B virus 35
Human herpesvirus 4 1 14 4 2 7 2 2 1 2
Human herpesvirus 4 type 1 1 14 4 2 7 2 4 1 2
Human herpesvirus 6A 2
Human papillomavirus - 5 2
Human papillomavirus 54 2
Human papillomavirus type 16 21767 15180 43668 9101 7813 67 132010 38070 15892 21 77 29 81 8 3819 121356 12 18 18095 20 6 6 28122 27683 18335 22166 50465 18261 67131 39601 52249 102363 68088 40115 5524 30044 21 52697 36350 67015 33003 14 26189 30104 38 89541 45244 53147 56044 26383 7710 22631 34071 16 43229 5245 11425 5533 35589 20 16769 1511 41223 9 65299 13621 72010 16 38218 7820 8291 31 393 36964 81042 77 10
Human papillomavirus type 18 36 5 4184 2 7 4837 312 6 15 8783 16691 2 4376 12 105409 94209 6 11 1 18 15 22 11175 1129 29319 23 26167 446 30884
Human papillomavirus type 26 1 1 1 1144 1
Human papillomavirus type 31 33 11 50 19 3 171 7 56141 6 1 215 6 51 71 8 4 34 4 121 47 105 363 106 62 2 40 58 2 61 149 33819 7 4 112 99 94 67 24 14 42 38 22 1 14 32 21 1 82 98 1 37 44 21 99928 19 50
Human papillomavirus type 32 1
Human papillomavirus type 33 1 1 7 6 9 1 126 1 145143 1 9 1 1 33 39 1366 4 24 2 6 2 4 10 14 7 6 1 1 2 2 12 3 1 6 5 2 2 151 862 2 4 99 1 3 1 2 12 8 1 518 3 2 4 1 7 1 4 10 2 4
Human papillomavirus type 34 1
Human papillomavirus type 39 1 675 7014 2161 1 1 1
Human papillomavirus type 45 1 19 1 31 25696 87 231 39 7852 1007 3110 19 45 30 1 1842 2 529 62449 2453 190 57110 262
Human papillomavirus type 52 1 435 56 1 22459 3 44 13072 1 11
Human papillomavirus type 53 4 4 15 19 9 19 3
Human papillomavirus type 56 7 5 10 12 1 60 2 6 77 4 11 25 7 7 62 28 13 29 7 26 13 2 10 7 2 24 102 8 7 10 24 26 15 14 6 21 19 4 86 1 1 25 33 11 2 10
Human papillomavirus type 58 1 1614 78080 10 2 39 1 1 92090 47 13 18681 1 5
Human papillomavirus type 59 1 1 1 5 1 2 3779 52 1
Human papillomavirus type 68b 1 263 10 47781 152 1 1
Human papillomavirus type 69 20395 11
Human papillomavirus type 70 1 5 13797 2512 184 8 2
Macacine herpesvirus 4 1
Maruca vitrata MNPV 1 2 1
Mason-Pfizer monkey virus 1
Merkel cell polyomavirus 2
Moloney murine leukemia virus 3
Moloney murine sarcoma virus 3
Murine osteosarcoma virus 2 1 1 1 1 1 1
Murine type C retrovirus 3
Papio hamadryas papillomavirus type 1 1
Pestivirus Giraffe-1 1 1 1 1 1 1
Plutella xylostella multiple nucleopolyhedrovirus 1 1 2 1 2 1 1 1 1 2 1 1 1 1 1 1 2 2 2 3 2 1 9 6 3 3
Rachiplusia ou MNPV 1 1 1 1 1 1 1 1 2 1 6 2 1 4 3 2 1
Rauscher murine leukemia virus 2
Rhesus monkey papillomavirus 1 5 2 8 1 2 1 4 1 1 1 1 1
Shamonda virus segment S 4 4 1 1 1 1 1 1 2 1 1 2 1 5 3 1 1 2 1 2 1 1 1 1 3 2 7 1 1 1 1 3 3 3 2 1 1 1 1 2 3 1 1 2 1 2 1 1 2 2 1 1 1 1
Spodoptera litura granulovirus 4
Tobacco vein clearing virus 1
Tomato mosaic virus 2 2
White clover mosaic virus 1
Woodchuck hepatitis virus 1
Woolly monkey sarcoma virus 1 1



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