The Landscape of Viral Expression and Host Gene Fusion and Adaptation in Human Cancer
 Online Supplementary Resource
About | Results | Larsson lab

Library statistics

Sequence libraries:109
Unique samples:109
Unique tumors:96
Unique normals:13
Unique patients:96
Reads per sample (mean):159 million
Total reads screened:17373 million
Total viral alignments:160094

Viral hits in ppm (parts-per-million) of total library reads

Tumor sample(hover for info)
Normal sample

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11 11 11 11 11 11 11 11 11 11 11 11
BK polyomavirus 450
Human herpesvirus 5 19 20
Human papillomavirus type 16 220
Human papillomavirus type 45 43
Human papillomavirus type 53 2
Human papillomavirus type 56 24
Human papillomavirus type 6b 182
JC polyomavirus 1
Simian virus 12 14

Non-normalized read counts

01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 01 11 11 11 11 11 11 11 11 11 11 11 11 11
Aotine herpesvirus 1 1
Autographa californica nucleopolyhedrovirus 3 1 2 2 3 2 4 1 1 1 2 1 1 1 2 1 1 1 1 2 1 1 2 1 1 3 2
BK polyomavirus 67613 5
Bombyx mandarina nucleopolyhedrovirus 1 1 1 1 1 1 1 1 1 1 2 1 1 1
Bombyx mori NPV 1 1 1 1 1 1 1 1 2 1 1 2
Bovine viral diarrhea virus 1 2 1 1
Cercopithecine herpesvirus 5 1
Citrus tristeza virus 4
Common chimpanzee papillomavirus 1 104
Cucumber green mottle mosaic virus 2
Cynomolgus macaque cytomegalovirus strain Ottawa 1 1
Hepatitis C virus genotype 5, genome 2
Human herpesvirus 4 4 4 2 8 32 14 10 4
Human herpesvirus 4 type 1 4 4 2 8 31 14 10 4
Human herpesvirus 5 3359 2 3 1 4106
Human herpesvirus 6A 31 1
Human herpesvirus 6B 61 9
Human papillomavirus type 16 14 6 2 31728 15
Human papillomavirus type 18 5 14
Human papillomavirus type 26 1
Human papillomavirus type 31 58
Human papillomavirus type 33 10
Human papillomavirus type 45 1 3884
Human papillomavirus type 53 285
Human papillomavirus type 56 4525 10
Human papillomavirus type 6b 7 41469
JC polyomavirus 208
Macacine herpesvirus 3 1 1
Macacine herpesvirus 4 1 2 1
Mamestra configurata NPV-A 1
Megavirus chiliensis 2
Merkel cell polyomavirus 2 4
Murine osteosarcoma virus 1 2 1 1 1
Murine type C retrovirus 5
Oryza sativa endornavirus 2 2
Ostreococcus lucimarinus virus OlV1 1
Panine herpesvirus 2 38 59
Pepper mild mottle virus 2 4
Pestivirus Giraffe-1 2 1 1
Plutella xylostella multiple nucleopolyhedrovirus 3 1 2 2 3 2 4 1 1 1 2 1 1 1 2 1 1 1 1 2 1 1 2 1 1 3
PreXMRV-1 provirus 2
Rachiplusia ou MNPV 2 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2
Shamonda virus segment S 1 1 11 1 1 1 1 1 2 1 1 3 1 1 1 5 2 1 1 2 7 1 3 1
Simian virus 12 2037 1
Tobacco etch virus 2
Tomato mosaic virus 13
WU Polyomavirus 2
Watermelon mosaic virus 1 1
Y73 sarcoma virus 1



Inquiries can be addressed to erik.larsson@gu.se